Completely replace CVC generation into the java side.

Now the full contents of the CVC3 file are generated inside of Java, but the
actual saving and running of CVC3 still happen inside of matlab.  For now.

git-svn-id: https://groke.mcmaster.ca/svn/grad/colin/branches/TableTool_javization@10651 57e6efec-57d4-0310-aeb1-a6c144bb1a8b